| Common Name | Scientific Name | Status |
| Monotremes | | |
| Platypus | Ornithorhynchus antinus | C |
| Short-beaked Echidna | Tachyglossus aculeatus | C |
| Marsupials | | |
| Dasyurids | | |
| Yellow-footed Antechinus | Antechinus flavipes | A |
| Brown Antechinus | Antechinus stuartii | A |
| Spotted-tailed Quoll * | Sasyurus maculatus | C to S |
| Bandicoots | | |
| Long-nosed Bandicoot | Perameles nasuta | C W |
| Northern Brown Bandicoot | Isoodon macrourus | C to A |
| Possums | | |
| Long-tailed Pygmy-possum | Cercartetus caudatus | C L |
| Striped Possum | Dactylopsila trivirgata | S L |
| Lemuroid Ringtail Possum | Hemibelideus lemuroides | R |
| Green Ringtail Possum | Pseudodochirops archeri | R |
| Herbert River Ringtail Possum | Pseudodochirops herbertensis | R |
| Sugar Glider | Petaurus breviceps | C |
| Coppery Brushtail Possum | Trichosurus vulpecula | CL |
| Macropods | | |
| Musky Rat-Kangaroo | Hypsiprymnodon moschatus | C L |
| Lumholt'z Tree-Kangaroo | Dendrolagus lumholtzi | R |
| Red-legged Pademelon | Thylogale stigmatica | C |
| Agile Wallaby | Macropus agilis | A |
| Placentals | | |
| Rodents | | |
| Water-rat | Hydromys chrysogaster | S to C L |
| Fawn-footed Melomys | Melomys cervinipes | C |
| Grassland Melomys | Melomys burtoni | A |
| Giant White-tailed Rat | Uromys caudimaculatus | C |
| Bush Rat | Rattus fuscipes | C |
| Canefield Rat | Rattus sordidus | A |
| Prehensile-tailed Rat | Pogonomys mollipilosus | C Re |
| Cape York Rat | Rattus leucopus | C L |
| Swamp Rat ** | Rattus lutreolus | C L |
| Bats | | |
| Little Red Flying-fox | Pteropus scapulatus | C L |
| Spectacled Flying-fox | Pteropus conspicillatus | V L |
| Black Flying-fox | Pteropus alecto | C |
| Tube-nosed Insect Bat * | Murina florium | V |
| Northern Blossom-bat | Macroglossus minimus | C Un |
| Common Blossom-bat | Syconycteris australis | C L |
| Eastern Tube-nosed bat | Nyctmene robinsoni | C |
| Eastern horsehoe-bat | Rhinolophus megaphyllus | C |
| Large-eared Horseshoe-bat * | Rhinolophus phillipinensis | R |
| Dusky Leafnosed Bat * | Hipposideros ater | U |
| Diadem Leafnosed Bat | Hipposideros diadema | R |
| Common Shealthtail-bat | Taphozous georglanus | C |
| Beccari's Freetail-bat | Mormopterus beccarii | C W |
| Little Bentwing-bat | Miniopterus australis | A |
| Greater Broad-nosed bat | Scoteanax rueppellii | U to R |
| Eastern Forest Bat | Vespadelus pemilus | C |
| Eastern Long-eared Bat | Nyctophilus bifax | R |
| Common Bentwing-bat | Miniopterus schreibersii | C |
| Golden-tipped Bat | Kerivoula papuensis | R |
| Yellow-bellied Shealthtail-bat | Saccolaimus flaviventris | R |
| Northern Freetail-bat | Chaereophon jobensis | R |
| Little Northern Freetail-bat | Mormopterus loriae | C W |
| White-striped Freetail-bat | Tadarida australia | C to U W |
| Little Broad-nosed Bat | Scotorepens greyii | C |
| Large-footed Myotis | Myotis moluccensis | U |
| Dingo | Canis lupus dingo | C to R |
| * | Only confirmed at Eacham | |
| ** | Only confirmed at Lake Barrine | |
